Publications
Penisson S, Sniegowski PD, Colato A, Gerrish PJ (2013) Lineage dynamics and mutation- selection balance in non-adapting asexual populations. Journal of Statistical Mechanics P01013 doi:10.1088/1742-5468/2013/01/P01013.
Sprouffske K, Merlo LMF, Gerrish PJ, Maley CC, Sniegowski PD, (2012) Cancer in light of experimental evolution. Current Biology 22: R762-R771, doi: 10.1016/j.cub.2012.06.065.
Gerrish PJ, Sniegowski, PD (2012) Real time forecasting of near-future evolution. Royal Society Interface, doi: 10.1098/rsif.2012.0119.
de la Iglesia F, Martinez F, Hillung J, Cuevas JM, Gerrish PJ, Daros JA, Elena SF (2012) Luria-Delbruck Estimation of Turnip mosaic virus Mutation Rate in vivo. Journal of Virology, 86: 3386-3388.
Gentile CF, Yu S-C, Serrano SA, Gerrish PJ, Sniegowski PD (2011) Competition between high- and higher-mutating strains of Escherichia coli. Biol. Lett. 7: 422-424.
Gerrish PJ, Sniegowski PD (2011). Adding dynamical sufficiency to Fisher’s fundamental theorem of natural selection. In Numerical Analysis and Applied Mathematics ICNAAM 2011, Volume 1389, T. Simos, G. Psihoyios, C. Tsitouras and Z. Anastassi, eds. (New York: American Institute of Physics), pp. 1260-1262.
Sniegowski PD, Gerrish PJ (2010) Beneficial mutations and the dynamics of adaptation. Phil. Trans. R. Soc. B 365: 1255-1263.
Gerrish PJ (2010) Mutation rate and the maintenance of cooperation: a parsimonious model of somatic evolution and oncogenic transitions. In Proceedings of Computational and Mathematical Methods in Science and Engineering, pp. 1129-1132.
Gerrish PJ (2009). Some observations about the nearest-neighbor model of the error threshold. In Numerical Analysis and Applied Mathematics ICNAAM 2009, T. Simos, G. Psihoyios and C. Tsitouras, eds. (New York: American Institute of Physics), pp. 1564-1568.
Gerrish PJ (2008) A simple formula for obtaining remarkably improved mutation rate estimates. Genetics 180: 1773-1778.
Gerrish PJ, Colato A, Perelson AS, Sniegowski PD (2007) Complete genetic linkage can subvert natural selection. PNAS 104: 6266-6271. Supplemental Online Material.
Burr TL, Gatticker JR, Gerrish PJ (2003) An investigation of error sources and their impact in estimating the time to the most recent ancestor of spatially and temporally distributed HIV sequences. Statistics in Medicine 22:1495-1516.
Gerrish PJ, Garcia Lerma JG (2003) Mutation rate and the efficacy of anti-microbial drug treatment. The Lancet Infectious Diseases 3:28-32.
Kalish ML, Korber BT, Pillai S, Robbins KE, Leo YS, Saekhou A, Verghese I, Gerrish P, Goh CL, Lupo D, Tan BH, Brown TM, Chan R (2003) The sequential introduction of HIV-1 subtype B and CRF01_AE in Singapore by sexual transmission: Accelerated V3 region evolution in a subpopulation of Asian CRF01 viruses. Virology 304:311-329.
Gerrish PJ (2002) Evolution plays dice. Nature (News & Views) 420:756-757.
Rozen D, de Visser JAGM, Gerrish PJ (2002) Fitness effects of fixed beneficial mutations in microbial populations. Current Biology 12:1040-1045
Johnson T, Gerrish PJ (2002) The probability of fixation of a beneficial mutation in populations that are dividing by binary fission. Genetica 115:283-287.
Wahl LM, Gerrish PJ, Saika-Voivod I (2002) Evaluating the effects of population bottle- necks in experimental evolution. Genetics 162:961-971.
Wahl LM, Gerrish PJ (2001) The probability that beneficial mutations are lost in populations with periodic bottlenecks. Evolution 55:2606-2610.
Gerrish PJ (2001) The rhythm of microbial adaptation. Nature 413:299-302.
Webby RJ, Swenson SL, Goyal SM, Krauss SL, Gerrish PJ, Webster RG (2000) Evolution of swine H3N2 Influenza viruses in the United States. Journal of Virology 74:8243-8251.
Garcia Lerma JG, Gerrish PJ, Wright AC, Qari SH, Heneine W (2000) Acquisition of the Q151M mutation may occur through a Q151L intermediate but requires the presence of specific polymorphisms (S68G) in HIV-1 reverse transcriptase. Journal of Virology 74:9339-9346.
Sniegowski PD, Gerrish PJ, Johnson T, Shaver A (2000) The evolution of mutation rates: separating causes and consequences. BioEssays 22:1057-1066.
Miralles R, Gerrish PJ, Moya A, Elena SF (1999) Clonal interference and the evolution of RNA viruses. Science 285:1745-1747.
De Visser JAGM, Zeyl CW, Gerrish PJ, Blanchard JL, Lenski RE (1999) Diminishing returns from mutation supply rate in asexual populations. Science 283:404-407.
Gerrish PJ, Lenski RE (1998) The fate of competing beneficial mutations in an asexual population. Genetica 102/103:127-144.
Sniegowski PD, Gerrish PJ, Lenski RE (1997) Evolution of high mutation rates in ex- perimental populations of Escherichia coli. Nature 387:703-705.
Lenski RE, Mongold JA, Sniegowski PD, Travisano M, Vasi F, Gerrish PJ, Scmidt TM (1996) Evolution of competitive fitness in experimental populations of Escherichia coli: what makes one genotype a better competitor than another? Antonie von Leeuwenhoek 73:35-47.
Submitted:
Gerrish PJ, Colato A, Sniegowski PD (2013) Genomic mutation rates that neutralize adaptive evolution and natural selection. Royal Society Interface (in 2nd round of review). Presently on arXiv:1211.0974
Sprouffske K, Merlo LMF, Gerrish PJ, Maley CC, Sniegowski PD, (2012) Cancer in light of experimental evolution. Current Biology 22: R762-R771, doi: 10.1016/j.cub.2012.06.065.
Gerrish PJ, Sniegowski, PD (2012) Real time forecasting of near-future evolution. Royal Society Interface, doi: 10.1098/rsif.2012.0119.
de la Iglesia F, Martinez F, Hillung J, Cuevas JM, Gerrish PJ, Daros JA, Elena SF (2012) Luria-Delbruck Estimation of Turnip mosaic virus Mutation Rate in vivo. Journal of Virology, 86: 3386-3388.
Gentile CF, Yu S-C, Serrano SA, Gerrish PJ, Sniegowski PD (2011) Competition between high- and higher-mutating strains of Escherichia coli. Biol. Lett. 7: 422-424.
Gerrish PJ, Sniegowski PD (2011). Adding dynamical sufficiency to Fisher’s fundamental theorem of natural selection. In Numerical Analysis and Applied Mathematics ICNAAM 2011, Volume 1389, T. Simos, G. Psihoyios, C. Tsitouras and Z. Anastassi, eds. (New York: American Institute of Physics), pp. 1260-1262.
Sniegowski PD, Gerrish PJ (2010) Beneficial mutations and the dynamics of adaptation. Phil. Trans. R. Soc. B 365: 1255-1263.
Gerrish PJ (2010) Mutation rate and the maintenance of cooperation: a parsimonious model of somatic evolution and oncogenic transitions. In Proceedings of Computational and Mathematical Methods in Science and Engineering, pp. 1129-1132.
Gerrish PJ (2009). Some observations about the nearest-neighbor model of the error threshold. In Numerical Analysis and Applied Mathematics ICNAAM 2009, T. Simos, G. Psihoyios and C. Tsitouras, eds. (New York: American Institute of Physics), pp. 1564-1568.
Gerrish PJ (2008) A simple formula for obtaining remarkably improved mutation rate estimates. Genetics 180: 1773-1778.
Gerrish PJ, Colato A, Perelson AS, Sniegowski PD (2007) Complete genetic linkage can subvert natural selection. PNAS 104: 6266-6271. Supplemental Online Material.
Burr TL, Gatticker JR, Gerrish PJ (2003) An investigation of error sources and their impact in estimating the time to the most recent ancestor of spatially and temporally distributed HIV sequences. Statistics in Medicine 22:1495-1516.
Gerrish PJ, Garcia Lerma JG (2003) Mutation rate and the efficacy of anti-microbial drug treatment. The Lancet Infectious Diseases 3:28-32.
Kalish ML, Korber BT, Pillai S, Robbins KE, Leo YS, Saekhou A, Verghese I, Gerrish P, Goh CL, Lupo D, Tan BH, Brown TM, Chan R (2003) The sequential introduction of HIV-1 subtype B and CRF01_AE in Singapore by sexual transmission: Accelerated V3 region evolution in a subpopulation of Asian CRF01 viruses. Virology 304:311-329.
Gerrish PJ (2002) Evolution plays dice. Nature (News & Views) 420:756-757.
Rozen D, de Visser JAGM, Gerrish PJ (2002) Fitness effects of fixed beneficial mutations in microbial populations. Current Biology 12:1040-1045
Johnson T, Gerrish PJ (2002) The probability of fixation of a beneficial mutation in populations that are dividing by binary fission. Genetica 115:283-287.
Wahl LM, Gerrish PJ, Saika-Voivod I (2002) Evaluating the effects of population bottle- necks in experimental evolution. Genetics 162:961-971.
Wahl LM, Gerrish PJ (2001) The probability that beneficial mutations are lost in populations with periodic bottlenecks. Evolution 55:2606-2610.
Gerrish PJ (2001) The rhythm of microbial adaptation. Nature 413:299-302.
Webby RJ, Swenson SL, Goyal SM, Krauss SL, Gerrish PJ, Webster RG (2000) Evolution of swine H3N2 Influenza viruses in the United States. Journal of Virology 74:8243-8251.
Garcia Lerma JG, Gerrish PJ, Wright AC, Qari SH, Heneine W (2000) Acquisition of the Q151M mutation may occur through a Q151L intermediate but requires the presence of specific polymorphisms (S68G) in HIV-1 reverse transcriptase. Journal of Virology 74:9339-9346.
Sniegowski PD, Gerrish PJ, Johnson T, Shaver A (2000) The evolution of mutation rates: separating causes and consequences. BioEssays 22:1057-1066.
Miralles R, Gerrish PJ, Moya A, Elena SF (1999) Clonal interference and the evolution of RNA viruses. Science 285:1745-1747.
De Visser JAGM, Zeyl CW, Gerrish PJ, Blanchard JL, Lenski RE (1999) Diminishing returns from mutation supply rate in asexual populations. Science 283:404-407.
Gerrish PJ, Lenski RE (1998) The fate of competing beneficial mutations in an asexual population. Genetica 102/103:127-144.
Sniegowski PD, Gerrish PJ, Lenski RE (1997) Evolution of high mutation rates in ex- perimental populations of Escherichia coli. Nature 387:703-705.
Lenski RE, Mongold JA, Sniegowski PD, Travisano M, Vasi F, Gerrish PJ, Scmidt TM (1996) Evolution of competitive fitness in experimental populations of Escherichia coli: what makes one genotype a better competitor than another? Antonie von Leeuwenhoek 73:35-47.
Submitted:
Gerrish PJ, Colato A, Sniegowski PD (2013) Genomic mutation rates that neutralize adaptive evolution and natural selection. Royal Society Interface (in 2nd round of review). Presently on arXiv:1211.0974